/admincp/vbactivity.php?do=maintenance&action=recalcpoints&dorecalcpoints=1
/admincp/vbactivity.php?do=maintenance&action=resetpoints&doresetpoints=1
/admincp/vbactivity.php?do=maintenance&action=recalcachievements
/admincp/vbactivity.php?do=maintenance&action=recalcpromotions
As for how those are run via CLI I wouldn't know, I have extremely little experience running PHP scripts from CLI.